This post may contain affiliate links and we will earn a commission if you purchase through those links. Thank you for supporting us!
These chocolate Kodiak protein muffins are protein-packed, rich in chocolate flavor, and made with Kodiak Cakes Power Cakes mix and Greek yogurt. They’re moist, tender, and made without butter or oil, making them a healthier yet indulgent muffin option. I love that these Kodiak chocolate muffins are so easy to make with simple ingredients, yet taste like a treat! Plus, they’re ready in about 30 minutes!

For more delicious muffins with Kodiak Cakes, try our banana chocolate chip Kodiak muffins, blender banana cottage cheese muffins, and banana blackberry muffins next!
🔍 Quick Look: Chocolate Kodiak Protein Muffins
- ⏱️ Prep Time: 12 minutes
- ⏱️ Cook Time: 18 minutes
- 🕒 Total Time: 30 minutes
- 🍽 Calories: ~88 kcal per serving
- 👥 Servings: 12 muffins
- 🥣 Key Ingredients: Kodiak Cakes, cocoa powder, Greek yogurt, applesauce
- 📖 Dietary Information: High-protein, meal-prep friendly
- 👩🍳 Cook Method: Oven-Baked
- ⭐ Difficulty: Easy, perfect for effortless baking.
Summarize & Save This Content On
Why You Will Love This Recipe
- Protein Muffins: These chocolate muffins are packed with protein from the Kodiak Cakes mix, Greek yogurt, and eggs. The best part is these muffins are made without protein powder!
- Easy to Make: Whip up these muffins quickly using Kodiak Cakes Power Cakes mix and simple pantry staples.
- Soft & Fluffy: These muffins have a soft and fluffy texture.
- Rich Chocolate Flavor: These muffins are packed with rich, decadent chocolate flavor.
- Healthy: They’re a lighter option made without butter or oil!
- No Banana: These muffins are completely chocolatey and moist with no bananas, so it’s perfect for anyone who just wants pure chocolate flavor!
- Low in Points: Each muffin is just 1 point on Weight Watchers!
“I made these chocolate Kodiak high-protein muffins, they are moist and delicious. My hubby even said they were the best lighter version chocolate muffins yet!!!”
– barb
Key Ingredients

- Kodiak Cakes: The base of these muffins is Kodiak Cakes Buttermilk Power Cakes Mix. For another recipe with Kodiak Cakes, try our sheet pan protein pancakes next!
- Cocoa Powder: Dutch-processed cocoa powder gives these muffins a delicious chocolate flavor.
- Greek Yogurt: These chocolate protein muffins are made with 0-fat Greek yogurt. It adds protein and keeps them tender and moist.
- Applesauce: Unsweetened applesauce keeps the muffins moist without butter or oil. You won’t taste the applesauce. It just helps make the muffins perfectly tender.
- Sweetener: Sweeten with sugar or a 1:1 sugar-free sweetener for a sugar-free option.
Find the full measurements in the recipe card below.
Substitutions & Variations
- Double Chocolate Muffins: To make Kodiak double chocolate muffins, add 1/4 cup of mini chocolate chips to the batter. For a sugar-free option, use Lily’s sugar-free chocolate chips or roughly chop a sugar-free chocolate bar.
- Deeper Flavor: You can add an optional pinch of cinnamon or espresso powder to deepen the chocolate flavor.
- Add Chopped Nuts: For a nutty twist, add up to 1/4 cup of chopped nuts, such as almonds or walnuts, to the batter.
- Yogurt to Use: We used non-fat Greek yogurt to keep these muffins light, but 2% or whole milk Greek yogurt works too. Just be sure to use plain Greek yogurt.
- Milk Options: Any milk will work! We used unsweetened almond milk, but you can also use regular milk, 1%, oat milk, cashew milk, or whatever you prefer.
How To Make Chocolate Kodiak Protein Muffins

- Add the Kodiak Cakes mix and baking powder to a large bowl. Then, sift the cocoa powder into the bowl. This helps create a smooth batter and avoid lumps. Thoroughly mix these dry ingredients.

- In a separate large bowl, thoroughly whisk the eggs and Greek yogurt until smooth, and there are no lumps. Then, whisk in the milk, applesauce, vanilla extract, and sweetener until smooth.

- Pour the wet ingredients into the bowl with the dry ingredients a little at a time, until the batter is fully incorporated, making sure not to over-mix.

- Lightly spray a non-stick muffin pan with olive oil spray or line it with parchment paper muffin liners. Pour the batter into the muffin cups.

- Bake the muffins at 350°F for 17-18 minutes, or until a toothpick inserted into the center comes out clean. Then, let them slightly cool, and enjoy!
Expert Tips
- Use the Buttermilk Mix: Make sure to use the Kodiak Cakes Buttermilk Power Cakes Mix. Don’t use the chocolate Kodiak Cakes mix, as we added cocoa powder to this recipe for chocolate flavor.
- Sift the Cocoa Powder: To help prevent lumps and to keep the batter smooth, sift your cocoa powder.
- Don’t Over-mix: To keep the muffins light and fluffy, avoid over-mixing the muffin batter.
- Whisk the Wet Ingredients: Thoroughly whisk the eggs and Greek yogurt so there are no lumps before adding the milk, applesauce, vanilla, and sweetener.
- Adjust for Sugar Substitutes: If using a sugar substitute, the batter may be thicker, as they can absorb more liquid. If needed, add one tablespoon of milk at a time until the batter reaches the right consistency.
Storage Instructions
Fridge: Store these chocolate Kodiak protein muffins in an airtight container in the refrigerator for 2-3 days.
Freezer: You can freeze these muffins! Store them in a freezer-safe container or bag and freeze for 1-2 months.
More Muffin Recipes to Try Next!
Cottage Cheese
Cottage Cheese Blueberry Muffins
Breakfast
Healthy Chocolate Zucchini Muffins
Breakfast
Banana Chocolate Chip Kodiak Muffins
Breakfast
Chocolate Blueberry Muffins
If you try this recipe, please be sure to leave us a comment and star rating, ★★★★★, letting us know how it turns out for you.
Chocolate Kodiak Protein Muffins

Ingredients
- 1 ½ cups Kodiak Cakes Buttermilk Power Cakes Mix
- 1/2 teaspoon baking powder
- 1/2 cup Dutch-processed cocoa powder
- 2 large eggs
- 1/2 cup 0-fat Greek yogurt
- 1/2 cup unsweetened almond milk or milk of choice
- 1/3 cup unsweetened applesauce
- 1 teaspoon vanilla extract
- 3/4 cup sugar or 1:1 sugar-free sweetener
Instructions
- Add the Kodiak Cakes mix and baking powder to a large bowl. Then, sift the cocoa powder into the bowl. This helps create a smooth batter and avoid lumps. Thoroughly mix these dry ingredients.
- In a separate large bowl, thoroughly whisk the eggs and Greek yogurt until smooth, and there are no lumps. Then, whisk in the milk, applesauce, vanilla extract, and sweetener until smooth.
- Pour the wet ingredients into the bowl with the dry ingredients a little at a time, until the batter is fully incorporated, making sure not to over-mix.
- Lightly spray a non-stick muffin pan with oil or line it with parchment paper muffin liners. Pour the batter into the muffin cups.
- Bake the muffins at 350°F for 17-18 minutes, or until a toothpick inserted into the center comes out clean. Then, let them slightly cool, and enjoy!
Video
Notes
- Whisk Well: Thoroughly whisk the eggs and Greek yogurt so there are no lumps before adding the milk, applesauce, vanilla, and sweetener.
- Adjust for Sugar Substitutes: If using a sugar substitute, the batter may be thicker, as they can absorb more liquid. If needed, add one tablespoon of milk at a time until the batter reaches the right consistency.
- Double Chocolate Muffins: For double chocolate Kodiak muffins, add 1/4 cup of mini chocolate chips to the batter. For a sugar-free option, use sugar-free chocolate chips or roughly chop a sugar-free chocolate bar.
Nutrition
Nutrition information is automatically calculated, so should only be used as an approximation.




















I’m going to update my review -yes you can taste the protein- but I’ve made these at least four times. I have one every morning with my protein coffee- and sometimes a second later in the day. Five stars.
Hi Jana, I’m so happy to hear that you’ve been enjoying these chocolate Kodiak protein muffins! I love that you enjoy them with your protein coffee in the morning, that sounds delicious! Thanks so much for letting us know you are enjoying the recipe!
Hi, I made these chocolate kodiak High protein muffins, they are moist and delicious. My hubby even said they were the best lighter version chocolate muffins yet!!!
Hi Barb, this makes me so happy to hear! I love that they turned out moist and delicious, and the fact that your husband said they were the best lighter chocolate muffins yet is such an amazing compliment. Thank you so much for sharing, I’m so glad you both enjoyed them!
Made these today with Bettergoods buttermilk protein pancake mix, and Whole Earth erythritol/ monkfruit. Added 1/4 cup Lilly’s sugar free dark chocolate chips. They were very good. They do have that protein taste- not quite as light as a regular muffin. I love a muffin in the morning with my protein coffee- these will be great – especially with the low points – the chips might make them 2 pts. Thank you ladies.
Hi Jana, thank you so much for sharing! I love the swaps you made, and the Lily’s chocolate chips sound like the perfect addition. Protein muffins can have a slightly different taste, but I’m so glad you enjoyed them with your morning protein coffee. And for just 1-2 points, that’s such a great win!
These chocolate Kodiak protein muffins are honestly perfect when you’re craving something sweet, rich, chocolatey, and so satisfying, they totally hit the spot every time!